EMPIAR-PDBj - Electron Microscopy Public Image Archive

大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。

Release date	Imageset	Title	Authors and references	Size	Resolution
2023-04-14	EMPIAR-11119	Structural insights into the human Prostaglandin E receptor EP3-Gi signaling complex [11241 multi-frame micrographs composed of 70 frames each in TIFF format]	Suno R, Sugita Y, Kobayashi T [Pubmed: 36103815] [DOI: 10.1016/j.celrep.2022.111323] EMD-32824 7wu9	3.4 TB	3.375 Å
2023-04-14	EMPIAR-11199	Thermostabilized human prestin in complex with chloride, sulfate or salicylate [multiple data sets in TIFF format]	Futamata H, Fukuda M, Umeda R, Yamashita K, Tomita A, Takahashi S, Shikakura T, Hayashi S, Kusakizako T, Nishizawa T, Homma K, Nureki O [Pubmed: 36266333] [DOI: 10.1038/s41467-022-34017-x] EMD-31757 EMD-31758 EMD-31759 7v73 7v74 7v75	3.9 TB	3.52 - 3.63 Å
2023-04-13	EMPIAR-11475	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2 [18846 multi-frame micrographs composed of 40 frames each in TIFF format]	Yang K, Brunger AT [Pubmed: 36122200] [DOI: 10.1073/pnas.2210990119] EMD-27098 8czi	5.1 TB	2.22 Å
2023-04-13	EMPIAR-11476	Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor [multiple data sets in TIFF format]	Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] EMD-28947 8fa1	14.9 TB	2.51 Å
2023-04-13	EMPIAR-11477	Cryo electron microscopy of DNA Polymerase alpha - primase bound to SARS-CoV-2 nsp1 virulence factor [2919 multi-frame micrographs composed of 48 frames each in TIFF format]	Kilkenny ML, Pellegrini L [Pubmed: 34719824] [DOI: 10.1002/pro.4220] EMD-13020 EMD-13021 7opl	806.7 GB	4.12 - 4.4 Å
2023-04-12	EMPIAR-11283	LRRC8A-BRIL:C Heteromer in GDN [multiple data sets in TIFF and MRCS formats]	Kern DM, Brohawn SG [Pubmed: 36928458] [DOI: 10.1038/s41594-023-00944-6] EMD-27682 EMD-27677 EMD-27678 EMD-27679 EMD-27681 EMD-27676 EMD-27674 EMD-27675 8ds3 8drk 8drn 8dro 8drq 8dre 8dr8 8dra	9.8 TB	2.95 - 4.16 Å
2023-04-12	EMPIAR-11439	Cryo-Electron Microscopy structure of OmcZ nanowires from Geobacter sulfurreducens [14005 multi-frame micrographs composed of 50 frames each in TIFF format]	Gu YG, Srikanth V, Salazar-Morales AI, Samatey FA, Malvankar NS, Guberman-Pfeffer MGP, Shen CS, Gupta KG, Londer YL, Giska FG, Batista VB [Pubmed: 36732469] [DOI: 10.1038/s41564-022-01315-5] EMD-23481 7lq5	7.1 TB	3.4 Å
2023-04-11	EMPIAR-11362	Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism [multiple data sets in TIFF and MRC formats]	Lomakin IB, Devarkar SC, Patel S, Grada A, Bunick CG [Pubmed: 36864821] [DOI: 10.1093/nar/gkad103] EMD-26959 8crx	6.8 TB	2.78 Å
2023-04-11	EMPIAR-11458	Cryo-EM micrographs for the Bombyx mori R2 retrotransposon initiating target-primed reverse transcription [16551 multi-frame micrographs composed of 40 frames each in TIFF format]	Wilkinson ME, Zhang F [Pubmed: 37023171] [DOI: 10.1126/science.adg7883] EMD-40033 8gh6	2.5 TB	3.08 Å
2023-04-11	EMPIAR-11466	Desulfonema ishimotonii Cas7-11 in complex with Csx29 and Csx30 [multiple data sets in TIFF format]	Strecker J, Demircioglu FE, Li D, Faure G, Wilkinson ME, Macrae RK, Zhang F [Pubmed: 36423276] [DOI: 10.1126/science.add7450] EMD-28064 EMD-28070 EMD-28065 EMD-28071 EMD-28072 EMD-28073 8eex 8eey	6.2 TB	2.53 - 3.15 Å
2023-04-11	EMPIAR-11482	Human PRPH2-ROM1 hetero-dimer [10448 multi-frame micrographs composed of 61 frames each in TIFF format]	El Mazouni D [Pubmed: 36351012] [DOI: 10.1126/sciadv.add3677] EMD-14991 7zw1	3.8 TB	3.7 Å
2023-04-11	EMPIAR-11483	Human PRPH2-ROM1 oligomers [multiple data sets in TIFF format]	El Mazouni D [Pubmed: 36351012] [DOI: 10.1126/sciadv.add3677] EMD-15021 EMD-15023 EMD-15020	6.6 TB	7.6 - 8.2 Å
2023-04-11	EMPIAR-11492	Structure of human choline/ethanolamine phosphotransferase [3115 multi-frame micrographs composed of 32 frames each in TIFF format]	Qian H EMD-34379 8gyx	1.5 TB	3.7 Å
2023-03-30	EMPIAR-11176	human ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7254 multi-frame micrographs composed of 1092 frames each in EER format]	Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] EMD-15587 EMD-15588 8aqs	4.6 TB	2.92 Å
2023-03-30	EMPIAR-11177	mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7989 multi-frame micrographs composed of 1092 frames each in EER format]	Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] EMD-15586 EMD-15592 8aqw	4.8 TB	2.92 - 3.3 Å
2023-03-27	EMPIAR-11180	mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.2.12.1 Spike [8046 multi-frame micrographs composed of 945 frames each in EER format]	Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] EMD-15584 EMD-15585 EMD-15591 8aqv	4.4 TB	2.89 - 3.03 Å
2023-03-27	EMPIAR-11181	mouse ACE2 receptor bound to SARS-CoV-2 variant Beta Spike [5671 multi-frame micrographs composed of 40 frames each in MRC format]	Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] EMD-15541 EMD-15589 8aqt	4.2 TB	4.4 Å
2023-03-27	EMPIAR-11381	Cryo electron microscopy of beta-2-microglobulin amyloid fibrils for the variant deltaN6 (in vitro, pH 6.2) [4095 multi-frame micrographs composed of 28 frames each in TIFF format]	Wilkinson M, Gallardo RU, Martinez RM, Guthertz N, So M, Aubrey LD, Radford SE, Ranson NA [Pubmed: 36864041] [DOI: 10.1038/s41467-023-36791-8] EMD-15222 EMD-15223 8a7o 8a7p	661.5 GB	3.0 - 3.4 Å
2023-03-27	EMPIAR-11383	Cryo electron microscopy of beta-2-microglobulin amyloid fibrils for the variant V27M (in vitro, pH 6.2) [611 multi-frame micrographs composed of 40 frames each in TIFF format]	Wilkinson M, Gallardo RU, Martinez RM, Guthertz N, So M, Aubrey LD, Radford SE, Ranson NA [Pubmed: 36864041] [DOI: 10.1038/s41467-023-36791-8] EMD-15224 8a7q	99.5 GB	2.8 Å
2023-03-27	EMPIAR-11384	Cryo electron microscopy of beta-2-microglobulin amyloid fibrils for the variant D76N (in vitro, pH 6.2) [3849 multi-frame micrographs composed of 36 frames each in TIFF format]	Wilkinson M, Gallardo RU, Martinez RM, Guthertz N, So M, Aubrey LD, Radford SE, Ranson NA [Pubmed: 36864041] [DOI: 10.1038/s41467-023-36791-8] EMD-15225 EMD-15226 EMD-15227 8a7t	617.9 GB	3.0 - 4.1 Å
2023-03-27	EMPIAR-11405	Cryo-EM structure of the ribosome/Sec61 translocon with a macrocyclic inhibitor KZR-8445 [multiple data sets in TIFF and MRC formats]	Rehan S [DOI: 10.1101/2022.07.03.498529] EMD-14776 7zl3	14.1 TB	3.2 Å
2023-03-22	EMPIAR-11462	Electron cryo-tomography data on the ER-mitochondria encounter structure in cryo-FIB milled yeast cells [multiple data sets in MRC and TIFF formats]	Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W [Pubmed: 37165187] [DOI: 10.1038/s41586-023-06050-3] EMD-15355	254.0 GB	—
2023-03-17	EMPIAR-11441	FMC63 scFv in complex with soluble CD19 [multiple data sets in TIFF format]	Meyerson JR, He C [Pubmed: 36867678] [DOI: 10.1126/sciimmunol.adf1426] EMD-26719 7urv	1.6 TB	3.05 Å
2023-03-17	EMPIAR-11464	SBFSEM imaging of Leishmania haptomonad-like cells attached to plastic [252 multi-frame micrographs composed of 1 frames each in MRC format]	Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187]	36.1 GB	—
2023-03-17	EMPIAR-11467	Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly [670 multi-frame micrographs composed of 1 frames each in MRC format]	Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187]	7.2 GB	—