EMPIAR-PDBj - Electron Microscopy Public Image Archive

大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。

Release date	Imageset	Title	Authors and references	Size	Resolution
2023-06-19	EMPIAR-11573	HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of dNTPs [696 multi-frame micrographs composed of 50 frames each in TIFF format]	Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] EMD-29775 8g6n	1.6 TB	3.5 Å
2023-06-19	EMPIAR-11574	HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of assembly cofactor IP6; bound to lenacapavir [696 multi-frame micrographs composed of 50 frames each in TIFF format]	Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] EMD-29776 8g6o	2.0 TB	3.1 Å
2023-06-16	EMPIAR-11570	HIV-1 capsid-like particles assembled from purified capsid protein and assembly cofactor IP6 [1487 multi-frame micrographs composed of 50 frames each in TIFF format]	Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] EMD-29772 8g6k	879.1 GB	3.6 Å
2023-06-16	EMPIAR-11572	HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of assembly cofactor IP6 (pH 7.4) [696 multi-frame micrographs composed of 50 frames each in TIFF format]	Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] EMD-29774 8g6m	1.2 TB	3.1 Å
2023-06-16	EMPIAR-11575	Defective HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the absence of assembly cofactor IP6 [696 multi-frame micrographs composed of 50 frames each in TIFF format]	Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] EMD-29777	490.0 GB	7.1 Å
2023-06-13	EMPIAR-11245	Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-1 stabilised by ADPNP [8136 multi-frame micrographs composed of 40 frames each in TIFF format]	Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] EMD-14573 EMD-14574 7z9k 7z9m	3.2 TB	3.25 - 3.3 Å
2023-06-13	EMPIAR-11246	Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-2 stabilised by ADPNP [11579 multi-frame micrographs composed of 40 frames each in TIFF format]	Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] EMD-14572 7z9g	4.4 TB	3.25 Å
2023-06-13	EMPIAR-11249	Cryo-EM SPA dataset of a native lysate fraction from human liver microsomes (fraction #1) [2406 multi-frame micrographs composed of 45 frames each in TIFF format]	SU C.-C. EMD-28262 EMD-28214 EMD-28217 8emr 8ekw 8eky	1.3 TB	2.83 - 3.47 Å
2023-06-13	EMPIAR-11250	Cryo-EM SPA dataset of a native lysate fraction from human liver microsomes (fraction #2) [8425 multi-frame micrographs composed of 45 frames each in TIFF format]	SU C.-C. EMD-28232 EMD-28263 EMD-28377 EMD-28264 EMD-28465 EMD-28271 EMD-26915 8em2 8ems 8eoj 8emt 8eor 8ene 7uzm	4.6 TB	2.64 - 3.24 Å
2023-06-09	EMPIAR-11502	Cryo-EM SPA dataset of 2-oxoglutarate dehydrogenase complex from a Chaetomium thermophilum native cell extract [25991 multi-frame micrographs composed of 13 frames each in MRC format]	Skalidis I, Kyrilis FL, Tüting C, Träger TK, Hamdi F, Kastritis PL [Pubmed: 37217784] [DOI: 10.1038/s42003-023-04885-0] EMD-16900 8oiu	7.5 TB	3.35 Å
2023-06-09	EMPIAR-11507	CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains [2138 multi-frame micrographs composed of 40 frames each in TIFF format]	Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] EMD-16018 8bfa	382.7 GB	3.0 Å
2023-06-09	EMPIAR-11508	CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains labelled with methoxy-X04 [4165 multi-frame micrographs composed of 40 frames each in TIFF format]	Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] EMD-16019 8bfb	696.0 GB	3.2 Å
2023-06-07	EMPIAR-11535	Cryo-electron micrographs of Hantaan virus polymerase in its apo state [2865 multi-frame micrographs composed of 50 frames each in TIFF format]	Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] EMD-16427 8c4s	709.4 GB	3.27 Å
2023-06-07	EMPIAR-11536	Cryo-electron micrographs of Hantaan virus polymerase in pre-initiation state [3261 multi-frame micrographs composed of 50 frames each in TIFF format]	Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] EMD-16429 8c4u	834.2 GB	3.36 Å
2023-06-07	EMPIAR-11540	Cryo-electron micrographs of Hantaan virus polymerase bound to its 5' viral RNA [2547 multi-frame micrographs composed of 50 frames each in TIFF format]	Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] EMD-16428 8c4t	653.1 GB	3.23 Å
2023-06-07	EMPIAR-11541	Cryo-electron micrographs of Hantaan virus polymerase in elongation state [3785 multi-frame micrographs composed of 50 frames each in TIFF format]	Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] EMD-16430 8c4v	995.9 GB	3.14 Å
2023-06-05	EMPIAR-11343	Cryo electron microscopy of Mce1 transporter from Mycobacterium smegmatis [multiple data sets in TIFF format]	Chen J, Bhabha G, Ekiert D [Pubmed: 37495693] [DOI: 10.1038/s41586-023-06366-0] EMD-29023 EMD-29024 EMD-29025 EMD-29228 EMD-29229 EMD-29230 EMD-29231 EMD-29232 EMD-29233 EMD-29234 EMD-29235 EMD-29236 EMD-29237 EMD-29238 EMD-29239 EMD-29240 EMD-29241 EMD-29242 8fed 8fee 8fef	23.0 TB	2.71 - 3.19 Å
2023-06-02	EMPIAR-11469	Cryo-ET tilt series from mouse islets lift-out sample [multiple data sets in TIFF format]	Wu Y, Qin C, Du W, Guo Z, Chen L, Guo Q [Pubmed: 37201639] [DOI: 10.1016/j.jsb.2023.107971] EMD-35652 EMD-35653 EMD-35654 EMD-35655	17.2 GB	—
2023-06-02	EMPIAR-11480	f1-derived nanorods [25065 multi-frame micrographs composed of 40 frames each in TIFF format]	Conners R, McLaren MJ, Gold V [Pubmed: 37169795] [DOI: 10.1038/s41467-023-37915-w] EMD-15831 EMD-15832 EMD-15833 8b3o 8b3p 8b3q	10.9 TB	2.58 - 2.97 Å
2023-06-02	EMPIAR-11498	Mycobacterium phage Patience [8640 multi-frame micrographs composed of 30 frames each in TIFF format]	Podgorski JM EMD-40077 8giu	2.5 TB	2.39 Å
2023-05-26	EMPIAR-11336	Cryo-EM SPA datasets for Antibody 4-33 in complex with prefusion SARS-CoV-2 Spike glycoprotein (K3 movies/.tif files) [6976 multi-frame micrographs composed of 60 frames each in TIFF format]	Casner RG, Reddem ER, Shapiro L [Pubmed: 37776849] [DOI: 10.1016/j.immuni.2023.09.003] EMD-26964 8csj	2.0 TB	3.53 Å
2023-05-26	EMPIAR-11552	Archaeal DNA ligase and heterotrimeric PCNA with ligatable nicked DNA [multiple data sets in TIFF format]	Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] EMD-24624 EMD-24625 7rpw 7rpx	5.9 TB	4.2 - 4.38 Å
2023-05-23	EMPIAR-10875	Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome [6339 multi-frame micrographs composed of 51 frames each in TIFF format]	Eek P, Tan S [Pubmed: 36996811] [DOI: 10.1016/j.molcel.2023.03.006] EMD-25406 7ssa	4.5 TB	3.2 Å
2023-05-23	EMPIAR-11551	Archaeal DNA ligase and heterotrimeric PCNA with non-ligatable nicked DNA [3014 multi-frame micrographs composed of 37 frames each in TIFF format]	Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] EMD-24618 7rpo	2.3 TB	4.16 Å
2023-05-23	EMPIAR-11553	PIC-Mediator in complex with +1 nucleosome (T40N) [20082 micrographs in MRC format]	Chen X, Wang X, Liu W, Ren Y, Qu X, Li J, Yin X, Xu Y [Pubmed: 36201575] [DOI: 10.1126/science.abn8131] EMD-34359 8gxq	1.9 TB	5.04 Å