Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-12-07 |  |
ASC-CARD:Caspase-1-CARD octamer [5377 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Ruan J, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
1.2 TB | 5.0 Å |
| 2020-12-07 |  |
Krios G4 apoferritin test with K3/(slit out) SerialEM BIS 1x1x4 [4184 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
1.2 TB | 1.43 Å |
| 2020-12-04 |  |
Cryo-EM motion corrected micrographs of rabbit muscle aldolase [1118 micrographs in MRC format] | Li Y., Cash J.N., Tesmer J.J.G., Cianfrocco M.A. [Pubmed: 32294468] [DOI: 10.1016/j.str.2020.03.008] |
59.3 GB | 3.2 Å |
| 2020-12-04 |  |
Tilt series of native M. pneumoniae cells treated with chloramphenicol [2666 tilt series in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
83.8 GB | 3.4 - 3.7 Å |
| 2020-12-04 |  |
Structure of the class D GPCR Ste2 dimer coupled to two G proteins [multiple data sets in MRC and TIFF formats] | Velazhahan V, Ma N, Pándy-Szekeres G, Kooistra AJ, Lee Y, Gloriam DE, Vaidehi N, Tate CG [Pubmed: 33268889] [DOI: 10.1038/s41586-020-2994-1] |
1.3 TB | 3.3 Å |
| 2020-12-04 |  |
Adeno-Associated Virus (AAV-DJ)-Cryo-EM Structure at 1.56 Å Resolution [2241 multi-frame micrographs composed of 200 frames each in TIFF format] | Yoshioka C [Pubmed: 33092282] [DOI: 10.3390/v12101194] |
2.8 TB | 1.56 Å |
| 2020-12-04 |  |
Cryo-EM Structure of PSII at 1.95 angstrom resolution [2160 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen J [Pubmed: 33753866] [DOI: 10.1038/s42003-021-01919-3] |
427.6 GB | 1.95 Å |
| 2020-12-04 |  |
NLRP1-CT filament [1994 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
534.7 GB | 3.72 Å |
| 2020-12-04 |  |
CryoEM map and model of Nitrite Reductase at pH 8.1 [694 multi-frame micrographs composed of 49 frames each in MRC format] | Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T [Pubmed: 34217801] [DOI: 10.1016/j.jsb.2021.107768] |
1.0 TB | 2.85 Å |
| 2020-12-04 |  |
Single-particle Cryo-EM of the Thermococcus gammatolerans McrB AAA+ hexamer [1605 multi-frame micrographs composed of 40 frames each in TIFF format] | Niu Y, Suzuki H, Hosford CJ, Walz T, Chappie JS [Pubmed: 33219217] [DOI: 10.1038/s41467-020-19735-4] |
644.6 GB | 3.1 Å |
| 2020-12-04 |  |
Single-particle Cryo-EM of the Thermococcus gammatolerans McrBC complex [2178 multi-frame micrographs composed of 40 frames each in TIFF format] | Niu Y, Suzuki H, Hosford CJ, Walz T, Chappie JS [Pubmed: 33219217] [DOI: 10.1038/s41467-020-19735-4] |
883.3 GB | 2.44 Å |
| 2020-12-04 |  |
Single-particle Cryo-EM of the Escherichia coli McrBC complex [1161 multi-frame micrographs composed of 80 frames each in TIFF format] | Niu Y, Suzuki H, Hosford CJ, Walz T, Chappie JS [Pubmed: 33219217] [DOI: 10.1038/s41467-020-19735-4] |
702.5 GB | 3.28 Å |
| 2020-12-02 |  |
Tetrameric Ptch1 complexed with ShhNp [5198 multi-frame micrographs composed of 32 frames each in MRC format] | Qian H, Yan N [Pubmed: 31127104] [DOI: 10.1038/s41467-019-10234-9] |
2.5 TB | 3.6 - 6.8 Å |
| 2020-12-02 |  |
Apoferritin tilt series and frame series used to benchmark the resolution of both data types in M [multiple data sets in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
39.6 GB | 2.3 Å |
| 2020-12-02 |  |
Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility. [127 tilt series in MRC format] | Grotjahn D.A, Lander G.C, Chowdhury S [Pubmed: 29416113] [DOI: 10.1038/s41594-018-0027-7] |
200.1 GB | 38.0 Å |
| 2020-12-02 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 1x1x4 [3472 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
966.0 GB | 1.35 Å |
| 2020-12-02 |  |
Single-particle cryo-EM micrographs of a chromatosome containing human linker histone H1.0 [1069 multi-frame micrographs composed of 76 frames each in TIFF format] | Zhou BR [Pubmed: 33238161] [DOI: 10.1016/j.molcel.2020.10.038] |
349.6 GB | 2.93 Å |
| 2020-12-02 |  |
Single-particle cryo-EM micrographs of a chromatosome containing human linker histone H1.4 [1183 multi-frame micrographs composed of 76 frames each in TIFF format] | Zhou BR [Pubmed: 33238161] [DOI: 10.1016/j.molcel.2020.10.038] |
208.9 GB | 2.76 Å |
| 2020-12-02 |  |
Single-particle cryo-EM micrographs of a chromatosome containing human linker histone H1.10 [667 multi-frame micrographs composed of 38 frames each in TIFF format] | Zhou BR [Pubmed: 33238161] [DOI: 10.1016/j.molcel.2020.10.038] |
278.2 GB | 3.12 Å |
| 2020-12-02 |  |
Single-particle cryo-EM micrographs of 197bp nucleosome with scFv [1986 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhou BR [Pubmed: 33238161] [DOI: 10.1016/j.molcel.2020.10.038] |
738.9 GB | 2.85 Å |
| 2020-12-02 |  |
Single-particle cryo-EM micrographs of a chromatosome containing chimeric linker histone gH1.10-ncH1.4 [1426 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhou BR [Pubmed: 33238161] [DOI: 10.1016/j.molcel.2020.10.038] |
571.7 GB | 3.03 Å |
| 2020-11-27 |  |
Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain [1604 multi-frame micrographs composed of 48 frames each in TIFF format] | Kalbermatter DK, Shrestha NS, Gall FMG, Wyss MW, Riedl RR, Plattet PP, Fotiadis DF [Pubmed: 32647825] [DOI: 10.1016/j.yjsbx.2020.100021] |
474.1 GB | 4.3 Å |
| 2020-11-27 |  |
Micrograph frames from 110 internal SEMC/NYSBC test datasets used for Topaz-Denoise model generation & analysis [1000000 micrographs in MRCS format] | Bepler T, Kelley K, Noble AJ, Berger B [Pubmed: 33060581] [DOI: 10.1038/s41467-020-18952-1] |
33.9 TB | 2.9 - 12.54 Å |
| 2020-11-27 |  |
CryoEM SPA of Holo-SrpI Encapsulin Complex (Raw Frames) [1023 multi-frame micrographs composed of 33 frames each in TIFF format] | Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF [Pubmed: 33821786] [DOI: 10.7554/eLife.59288] |
390.3 GB | 2.2 Å |
| 2020-11-27 |  |
Movies of Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP [63977 multi-frame micrographs composed of 24 frames each in MRCS format] | Naydenova K, Muir KW, Wu LF, Zhang Z, Coscia F, Peet MJ, Castro-Hartmann P, Qian P, Sader K, Dent K, Kimanius D, Sutherland JD, Löwe J, Barford D, Russo CJ [Pubmed: 33526596] [DOI: 10.1073/pnas.2021946118] |
23.9 TB | 2.5 Å |
