EMPIAR-PDBj - Electron Microscopy Public Image Archive

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Release date	Imageset	Title	Authors and references	Size	Resolution
2021-10-18	EMPIAR-10701	Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format]	Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] EMD-12811 EMD-12812 EMD-12813 EMD-12814	8.0 GB	33.0 - 39.0 Å
2021-10-18	EMPIAR-10799	E. coli MsbA in nanodiscs in complex with G247 [multiple data sets in MRC format]	Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] EMD-23805 7mew	442.5 GB	3.9 Å
2021-10-18	EMPIAR-10801	Drug-free A. baumannii MsbA [6113 micrographs in MRC format]	Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] EMD-23804	268.4 GB	5.2 Å
2021-10-11	EMPIAR-10781	Nucleolar maturation of the human small subunit processome [multiple data sets in TIFF and MRC formats]	Singh S, Vanden Broeck A, Klinge S [Pubmed: 34516797] [DOI: 10.1126/science.abj5338] EMD-23939 EMD-23936 EMD-24149 EMD-24150 EMD-24151 EMD-24152 EMD-24153 EMD-24154 EMD-24155 EMD-24156 EMD-24157 EMD-24158 EMD-24159 EMD-24160 EMD-24161 EMD-23940 EMD-23938 EMD-24162 EMD-24163 EMD-24164 EMD-24165 EMD-24166 EMD-24167 EMD-24168 EMD-24169 EMD-24170 EMD-24171 EMD-24172 EMD-24173 EMD-24174 EMD-24175 EMD-24176 7mq8 7mqa	74.6 TB	2.6 - 6.37 Å
2021-10-05	EMPIAR-10737	Cryo-EM structures of E. coli cytochrome bo3 in MSP Nanodiscs [3446 multi-frame micrographs composed of 50 frames each in TIFF format]	Vallese F [Pubmed: 34417297] [DOI: 10.1073/pnas.2106750118] EMD-24265 7n9z	851.4 GB	2.19 Å
2021-10-01	EMPIAR-10508	Cryo-EM structure of the SpCas9 delta4CE Ternary Complex [2570 multi-frame micrographs composed of 60 frames each in TIFF format]	Laughlin TG, Shams A, Savage DF [Pubmed: 34580310] [DOI: 10.1038/s41467-021-25992-8] EMD-22518	1.5 TB	6.2 Å
2021-10-01	EMPIAR-10752	Single particle cryo EM Data of a human Akirin2 proteasome complex [multiple data sets in TIFF and MRC formats]	de Almeida M, Hinterndorfer M, Brunner H, Grishkovskaya I, Singh K, Schleiffer A, Jude J, Deswal S, Kalis R, Vunjak M, Lendl T, Imre R, Roitinger E, Neumann T, Kandolf S, Schutzbier M, Mechtler K, Versteeg GA, Haselbach D, Zuber J [Pubmed: 34711951] [DOI: 10.1038/s41586-021-04035-8] EMD-12341 7nht	2.0 TB	3.2 Å
2021-10-01	EMPIAR-10812	Training data set for automated 2D class selection [18051 class averages in MRCS format]	Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW [Pubmed: 34783343] [DOI: 10.1042/bcj20210708]	20.7 GB	—
2021-09-28	EMPIAR-10778	A. baumannii MsbA in complex with TBT1 [6083 micrographs in MRC format]	Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] EMD-23803 7met	267.1 GB	3.97 Å
2021-09-28	EMPIAR-10793	Cryo-electron microscopy of the liposome-embedded type 1 ryanodine receptor [11187 multi-frame micrographs composed of 50 frames each in TIFF format]	Melville ZM, Kim K, Clarke OB, Marks AR [Pubmed: 34469755] [DOI: 10.1016/j.str.2021.08.001] EMD-23692 EMD-23699 7m6a 7m6l	2.4 TB	3.36 - 3.98 Å
2021-09-24	EMPIAR-10691	Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract (lot1) [multiple data sets in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22791 EMD-22792 EMD-22795 EMD-22796 7kbe 7kbf	1.3 TB	3.5 - 5.5 Å
2021-09-24	EMPIAR-10692	Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot 1 [1364 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22790 EMD-22793 EMD-22794 7kbd	634.3 GB	3.38 - 8.07 Å
2021-09-24	EMPIAR-10742	Mono nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22797	749.0 GB	5.12 Å
2021-09-24	EMPIAR-10744	Di nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22798	805.9 GB	4.74 Å
2021-09-24	EMPIAR-10750	'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-23826	1.1 TB	5.44 Å
2021-09-24	EMPIAR-10795	A microtubule RELION-based pipeline for cryo-EM image processing [1128 multi-frame micrographs composed of 64 frames each in MRC format]	Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31748546] [DOI: 10.1038/s41467-019-13247-6] EMD-4643 6qus	1.6 TB	3.7 Å
2021-09-24	EMPIAR-10796	A microtubule RELION-based pipeline for cryo-EM image processing [multiple data sets in TIFF format]	Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] EMD-10131	256.7 GB	4.2 Å
2021-09-22	EMPIAR-10743	Mono nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1792 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22800	778.6 GB	5.64 Å
2021-09-22	EMPIAR-10745	Di nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1386 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-22801	825.4 GB	8.1 Å
2021-09-22	EMPIAR-10746	Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract lot2 [1456 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-23821 EMD-23822	696.5 GB	3.77 - 4.32 Å
2021-09-22	EMPIAR-10747	Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot2 [1376 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-23819 EMD-23820	648.2 GB	3.54 - 4.42 Å
2021-09-22	EMPIAR-10748	Open linker DNA nucleosome reconstituted with GUB DNA [1576 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-23824	777.0 GB	4.52 Å
2021-09-22	EMPIAR-10749	Closed linker DNA nucleosome reconstituted with GUB DNA [1320 multi-frame micrographs composed of 50 frames each in TIFF format]	Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] EMD-23823	624.4 GB	3.77 Å
2021-09-17	EMPIAR-10714	human melatonin receptor MT1 - Gi1 complex [3487 multi-frame micrographs composed of 48 frames each in TIFF format]	Okamoto HH, Miyauchi H, Inoue A, Raimondi F, Tsujimoto H, Kusakizako T, Shihoya W, Yamashita K, Suno R, Nomura N, Kobayashi T, Iwata S, Nishizawa T, Nureki O [Pubmed: 34354246] [DOI: 10.1038/s41594-021-00634-1] EMD-30627 7db6	878.0 GB	3.3 Å
2021-09-17	EMPIAR-10717	Single particle Data of diazaborine bound Drg1 [4963 multi-frame micrographs composed of 54 frames each in TIFF format]	Prattes M, Grishkovskaya I, Hodirnau VV, Haselbach D, Bergler H [Pubmed: 34108481] [DOI: 10.1038/s41467-021-23854-x] EMD-12448 7nku	1.6 TB	3.4 Å

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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