Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-11-19 |  |
Raw data used to generate the structure of R257C ACTG2 F-actin [1021 multi-frame micrographs composed of 40 frames each in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
505.6 GB | 2.72 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of R40C ACTG2 F-actin [multiple data sets in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
2.1 TB | 2.54 Å |
| 2024-11-19 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [4805 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
515.0 GB | — |
| 2024-11-19 |  |
Training Set for CryoVesNet - Cryo-electron tomograms of rat synaptosomes and synaptic vesicle segmentation [multiple data sets in MRC format] | Khosrozadeh A, Seeger R, Witz G, Radecke J, Sørensen JB, Zuber B [Pubmed: 36876590] [DOI: 10.1101/2022.04.10.487799] |
9.5 GB | — |
| 2024-11-19 |  |
Rubisco data taken with laser-off [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 36.5 GB | 3.1 Å |
| 2024-11-19 |  |
Rubisco data taken with laser-on [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 37.2 GB | 3.1 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-off [108 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP [Pubmed: 39536845] [DOI: 10.1016/j.jsb.2024.108150] |
41.0 GB | 2.6 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-on [209 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP, Remis JP [Pubmed: 39536845] [DOI: 10.1016/j.jsb.2024.108150] |
55.8 GB | 2.7 Å |
| 2024-11-12 |  |
Cryo-EM structure of T. pseudonana PyShell helical tube [5994 multi-frame micrographs composed of 52 frames each in TIFF format] | Kawamoto A, Tohda R, Gerle C, Kurisu G [Pubmed: 39357521] [DOI: 10.1016/j.cell.2024.09.013] |
1.5 TB | 2.4 Å |
| 2024-11-12 |  |
Low-dose cryo-electron ptychography of Tobacco Mosaic Virus at 6.1 mrad [114 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [Pubmed: 39277607] [DOI: 10.1038/s41467-024-52403-5] |
137.9 GB | 5.8 - 12.3 Å |
| 2024-11-12 |  |
Cryo electron micrographs of Plastid-encoded RNA polymerase (PEP) from Sinapis alba [21347 multi-frame micrographs composed of 50 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
5.0 TB | 2.3 - 2.9 Å |
| 2024-11-08 |  |
Cryo-electron microscopy of Avidin [14206 multi-frame micrographs composed of 623 frames each in EER format] | Nazarov S, Beckert Dominique B, Myasnikow A | 3.7 TB | 2.08 Å |
| 2024-11-08 |  |
Automethylated PRC2 dimer bound to nucleosome [multiple data sets in MRC format] | Sauer PV, Pavlenko E, Nogales E, Poepsel S, Cookis T [Pubmed: 39303719] [DOI: 10.1016/j.molcel.2024.08.025] |
2.0 TB | 4.0 - 6.2 Å |
| 2024-11-08 |  |
Cryo-EM structure of the gastric proton pump [multiple data sets in TIFF format] | Abe K, Yokoshima S, Yoshimori A [Pubmed: 37726448] [DOI: 10.1038/s42003-023-05334-8] |
8.1 TB | 2.08 - 2.26 Å |
| 2024-11-08 |  |
Cryo-EM SPA datasets of Streptococcus pneumoniae NADPH oxidase F397A mutant with NADPH under turnover conditions [multiple data sets in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
18.3 TB | 2.64 Å |
| 2024-11-06 |  |
Tilt series of Mycoplasma pneumoniae cells treated with chloramphenicol collected on Gatan K3 camera [139 multi-frame micrographs composed of 10 frames each in TIFF format] | Xue L, Spahn CMT, Schacherl M, Mahamid J | 183.0 GB | 3.0 Å |
| 2024-11-06 |  |
Comparative 3D ultrastructure of Plasmodium falciparum gametocytes [multiple data sets in TIFF format] | Evers F, Roverts R, Boshoven C, Lindert MK, Sinden RE, Akiva A, Kooij TWA, Verhoef JMJ, Sommerdijk N [DOI: 10.1101/2023.03.10.531920] |
256.8 GB | — |
| 2024-11-06 |  |
Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad [100 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [Pubmed: 39277607] [DOI: 10.1038/s41467-024-52403-5] |
147.6 GB | 5.8 - 12.3 Å |
| 2024-11-06 |  |
Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format] | Castranova D, Dell CW, Narayan K, Weinstein BM [DOI: 10.1101/2024.07.25.605139] |
12.2 GB | — |
| 2024-11-04 |  |
CryoEM structure of a post-assembly MS-ring reveals plasticity in stoichiometry and conformation [11627 multi-frame micrographs composed of 50 frames each in MRC format] | Singh PK, Iverson TM [Pubmed: 37205674] [DOI: 10.1371/journal.pone.0285343] |
12.9 TB | 2.9 - 4.1 Å |
| 2024-10-25 |  |
Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation [multiple data sets in DM4 format] | Cisneros- Soberanis F, Abad MA, Medina-Pritchard B, Jeyaprakash AA, Gibcus JHG, Dekker J, Paulson JR, Xie L, Prior IA, Beckett AJ, Earnshaw WC, Samejima I, Samejima K, Pucekova N, Minry L, Goloborodko A, Abraham S | 20.4 GB | — |
| 2024-10-11 |  |
CryoEM ice images and labels used for VirtualIce [multiple data sets in MRC, MRCS and JPEG formats] | Noble AJ [DOI: 10.1101/2024.09.28.615520] |
331.3 GB | — |
| 2024-10-10 |  |
Structural basis for directional rotation of the Salmonella flagellum [39322 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
10.0 TB | 3.4 - 6.7 Å |
| 2024-10-09 |  |
Purified Photoreceptor Cell Rootlet Tomograms [multiple data sets in MRC and TIFF formats] | van Hoorn C, Carter AP [DOI: 10.7554/eLife.91642.1] |
472.4 GB | — |
| 2024-10-09 |  |
Cryo-EM structure of in-vitro alpha-synuclein fibril [5193 multi-frame micrographs composed of 40 frames each in TIFF format] | Sanchez JC, Borcik CG, Tonelli M, Sibert B, Rienstra CM, Wright ER | 847.8 GB | 2.04 Å |
