Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-08-06 | Cryo-EM Structure of GluD1-Orphan Delta Receptor Reveals a Novel Architecture in the Ionotropic Glutamate Receptor Family [3938 multi-frame micrographs composed of 40 frames each in MRC format] | Burada AP, Vinnakota R, Kumar J [Pubmed: 31925409] [DOI: 10.1038/s41594-019-0359-y] |
6.5 TB | 8.1 Å | |
| 2020-08-06 | Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [18 multi-frame micrographs composed of 300 frames each in TIFF format] | Peddie CP, Jones ML, Collinson LM | 15.6 GB | — | |
| 2020-08-06 | FIB/SEM sample dataset MCB-CLEM IV Weiner [1 multi-frame micrographs composed of 844 frames each in TIFF format] | Weiner A | 2.8 GB | — | |
| 2020-07-30 | Cryo electron microscopy of RyR1 in the presence and abscence of Ca, Caffeine and ATP ligands [stack of 791956 particles in SPIDER format] | Dashti A [Pubmed: 32948759] [DOI: 10.1038/s41467-020-18403-x] |
334.2 GB | 4.5 Å | |
| 2020-07-30 | Single-Particle Cryo-EM of Arabinosyltransferase EmbB from Mycobacterium smegmatis, Collected using both Falcon III and K2 Detectors [multiple data sets in MRCS, TIFF and MRC formats] | Tan YZ, Rodrigues J, Keener JE, Zheng RB, Brunton R, Kloss B, Giacometti SI, Rosário AL, Zhang L, Niederweis M, Clarke OB, Lowary TL, Marty MT, Archer M, Potter CS, Carragher B, Mancia F [Pubmed: 32636380] [DOI: 10.1038/s41467-020-17202-8] |
4.5 TB | 3.3 Å | |
| 2020-07-30 | Cryo-EM structures of calcium homeostasis modulator (CALHM) channels [multiple data sets in TIFF format] | Demura K, Kusakizako T, Shihoya W, Hiraizumi M, Shimada H, Yamashita K, Nishizawa T, Nureki O [Pubmed: 32832629] [DOI: 10.1126/sciadv.aba8105] |
6.8 TB | 2.66 - 3.6 Å | |
| 2020-07-28 | Cryo-EM structure of the formoterol-bound turkey beta1 adrenoceptor coupled to beta-arrestin-1 with bound Fab30 in lipid nanodisc [multiple data sets in TIFF and MRCS formats] | Lee Y, Tate CG [Pubmed: 32555462] [DOI: 10.1038/s41586-020-2419-1] |
4.0 TB | 3.3 Å | |
| 2020-07-28 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 1 [multiple data sets in TIFF and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
599.5 GB | — | |
| 2020-07-28 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — | |
| 2020-07-27 | Saccharomyces cerevisiae fatty acid synthase complex with bound gamma subunit [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
329.3 GB | 2.8 Å | |
| 2020-07-27 | Saccharomyces cerevisiae fatty acid synthase complex [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
391.7 GB | 2.9 Å | |
| 2020-07-24 | Human delta protocadherin 1 full ectodomains on membranes, tomogram 1 [multiple data sets in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
247.7 GB | — | |
| 2020-07-24 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — | |
| 2020-07-21 | Human delta protocadherin 1 full ectodomains on membranes, tomogram 3 [multiple data sets in MRC and TIFF formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
106.5 GB | — | |
| 2020-07-21 | TASK2 in MSP1D1 lipid nanodisc at pH8.5 [3470 multi-frame micrographs composed of 50 frames each in TIFF format] | Li B, Brohawn SG [Pubmed: 32999458] [DOI: 10.1038/s41586-020-2770-2] |
2.3 TB | 3.52 Å | |
| 2020-07-21 | TASK2 in MSP1D1 lipid nanodisc at pH6.5 [3024 multi-frame micrographs composed of 50 frames each in TIFF format] | Li B, Brohawn SG [Pubmed: 32999458] [DOI: 10.1038/s41586-020-2770-2] |
2.0 TB | 3.45 Å | |
| 2020-07-21 | Single particle cryo EM dataset of SARS-CoV-2 Spike protein in uncleavable form, which generated a 2.6Å reconstruction of the closed trimer. [9210 multi-frame micrographs composed of 30 frames each in MRC format] | Wrobel AG, Benton DJ, Nans A, Rosenthal PB, Gamblin SJ [Pubmed: 32647346] [DOI: 10.1038/s41594-020-0468-7] |
8.4 TB | 2.6 Å | |
| 2020-07-15 | CryoEM reconstruction of human ABCG2 transporter with inhibitor MZ29 and 5D3-Fab [multiple data sets in MRC and MRCS formats] | Jackson SM, Manolaridis I, Kowal J, Zechner M, Taylor NMI, Bause M, Bauer S, Bartholomaeus R, Bernhardt G, Koenig B, Buschauer A, Stahlberg H, Altmann KH, Locher KP [Pubmed: 29610494] [DOI: 10.1038/s41594-018-0049-1] |
1.9 TB | 3.1 Å | |
| 2020-07-14 | Separating distinct macromolecular assemblies from cryo-EM images [2423 micrographs in MRC format] | Verbeke EJ, Zhou Y, Horton AP, Mallam AL, Taylor DW, Marcotte EM [Pubmed: 31726096] [DOI: 10.1016/j.jsb.2019.107416] |
128.5 GB | 4.0 - 19.0 Å | |
| 2020-07-14 | 3 Å resolution single particle reconstruction of glucosyltransferase ALG6 in nanodisc [multiple data sets in MRC and TIFF formats] | Bloch JS, Pesciullesi G, Boilevin J, Nosol K, Irobalieva RN, Darbre T, Aebi M, Kossiakoff AA, Reymond JL, Locher KP [Pubmed: 32103179] [DOI: 10.1038/s41586-020-2044-z] |
2.8 TB | 3.0 Å | |
| 2020-07-10 | Cryo electron tomography - tilt-series of Sars-Cov-2 [266 tilt series in MRC format] | Turoňová B, Sikora M, Schürmann C, Hagen WJH, Welsch S, Blanc FEC, von Bülow S, Gecht M, Bagola K, Hörner C, van Zandbergen G, Landry J, de Azevedo NTD, Mosalaganti S, Schwarz A, Covino R, Mühlebach MD, Hummer G, Krijnse Locker J, Beck M [Pubmed: 32817270] [DOI: 10.1126/science.abd5223] |
469.8 GB | 4.9 - 7.9 Å | |
| 2020-07-06 | Subnanometer-resolution structure determination in situ by a hybrid subtomogram averaging - single particle cryoEM - workflow - on TMV [4 tilt series in MRC format] | Sanchez RM, Zhang Y, Chen W, Dietrich L, Kudryashev M [Pubmed: 32709843] [DOI: 10.1038/s41467-020-17466-0] |
37.5 GB | 5.24 Å | |
| 2020-07-06 | Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format] | Greber BJ, Toso DB, Fang J, Nogales E [Pubmed: 30860024] [DOI: 10.7554/eLife.44771] |
9.2 TB | 3.7 Å | |
| 2020-07-06 | Single particle cryo-EM dataset of human adenovirus HAdV-D26 [stack of 8684 particles in MRCS format] | Abrishami V, Reddy VS, Huiskonen JT [Pubmed: 32470354] [DOI: 10.1016/j.pbiomolbio.2020.05.004] |
46.5 GB | 3.1 - 7.34 Å | |
| 2020-07-03 | Cryo-EM structure of RNF213 reveals a RING-type E3 with a dynein core and cysteine reactivity [multiple data sets in TIFF format] | Ahel J, Lehner A, Vogel A, Schleiffer A, Meinhart A, Haselbach D, Clausen T [Pubmed: 32573437] [DOI: 10.7554/eLife.56185] |
1.9 TB | 3.2 Å |