Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2016-09-22 |  |
Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Angstrom (particle images) [stack of 473827 particles in MRC format] | Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K [Pubmed: 26829225] [DOI: 10.1038/nature16940] |
75.2 GB | 3.7 Å |
| 2016-09-21 |  |
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ [751 micrographs in MRC format] | Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ [Pubmed: 27561669] [DOI: 10.1038/ncomms12524] |
46.9 GB | 5.0 - 10.5 Å |
| 2016-08-18 |  |
Structure and Dynamics of Single-isoform Recombinant Neuronal Human Tubulin [304 multi-frame micrographs composed of 23 frames each in MRC format] | Vemu A, Atherton J, Spector JO, Szyk A, Moores CA, Roll-Mecak A [Pubmed: 27129203] [DOI: 10.1074/jbc.C116.731133] |
487.7 GB | 4.0 Å |
| 2016-08-15 |  |
VPP subtomogram averaging [11 class averages in MRC format] | Khoshouei M, Pfeffer S, Baumeister W, Foerster F, Danev R [Pubmed: 27235783] [DOI: 10.1016/j.jsb.2016.05.009] |
33.9 GB | 9.6 Å |
| 2016-08-03 |  |
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis [multiple data sets in MRC and RAW FEI formats] | Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ [Pubmed: 27435188] [DOI: 10.1038/NCOMMS11387] |
3.3 TB | 4.3 Å |
| 2016-07-06 |  |
Unsupervised single-particle deep classification via statistical manifold learning [multiple data sets in MRC format] | Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y | 28.2 GB | — |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [50 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
3.7 GB | 22.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [100 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
7.3 GB | 25.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [177 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
13.0 GB | 20.0 Å |
| 2016-06-20 |  |
Lambda excision HJ intermediate [stack of 66033 particles in MRC format] | Laxmikanthan G, Xu C, Brilot AF, Warren D, Steele L, Seah N, Tong W, Grigorieff N, Landy A, Van Duyne G [Pubmed: 27223329] [DOI: 10.7554/elife.14313] |
4.0 GB | 11.0 Å |
| 2016-06-17 |  |
Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization [multiple data sets in SPIDER and MRC formats] | Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H [Pubmed: 26449474] [DOI: 10.1126/science.aac5789] |
1.7 TB | 4.7 - 12.5 Å |
| 2016-06-07 |  |
Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc [multiple data sets in MRC format] | Gao Y [Pubmed: 27281200] [DOI: 10.1038/nature17964] |
93.8 GB | 2.95 Å |
| 2016-04-15 |  |
2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor [multiple data sets in MRC format] | Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S [Pubmed: 25953817] [DOI: 10.1126/science.aab1576] |
631.2 GB | 2.2 Å |
| 2016-04-05 |  |
Subset of image stack used for 3D reconstruction [36694 micrographs in MRC format] | Egelman EH [Pubmed: 25999507] [DOI: 10.1126/science.aaa4181] |
35.9 GB | 3.8 Å |
| 2016-03-16 |  |
Volta phase plate in-focus dataset of T20S proteasome [158 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
50.3 GB | 3.2 Å |
| 2016-03-16 |  |
Cryo-EM dataset of T20S proteasome [293 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
93.3 GB | 3.1 Å |
| 2016-02-04 |  |
Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and dat formats] | Khoshouei MK [Pubmed: 26817416] [DOI: 10.1038/ncomms10534] |
612.5 GB | 4.4 Å |
| 2016-01-27 |  |
Cryo-electron tomogram of host-free Chlamydia trachomatis with type III secretion system [1 class averages in MRC format] | Nans A, Kudryashev M, Saibil HR, Hayward RD [Pubmed: 26656452] [DOI: 10.1038/ncomms10114] |
11.6 GB | 33.0 Å |
| 2016-01-27 |  |
Cryo-electron tomogram of Chlamydia trachomatis with type III secretion system in contact with HeLa cell [1 class averages in MRC format] | Nans A, Kudryashev M, Saibil HR, Hayward RD [Pubmed: 26656452] [DOI: 10.1038/ncomms10114] |
13.6 GB | 38.0 Å |
| 2016-01-20 |  |
SBF-SEM of ring-stage malaria parasite infected red blood cell [120 micrographs in MRC format] | Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K [Pubmed: 26772147] [DOI: 10.1016/j.jsb.2016.01.003] |
293.0 MB | — |
| 2016-01-20 |  |
SBF-SEM of trophozoite-stage malaria parasite infected red blood cell [110 micrographs in MRC format] | Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K [Pubmed: 26772147] [DOI: 10.1016/j.jsb.2016.01.003] |
268.6 MB | — |
| 2016-01-20 |  |
SBF-SEM of early schizont-stage malaria parasite infected red blood cell [80 micrographs in MRC format] | Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K [Pubmed: 26772147] [DOI: 10.1016/j.jsb.2016.01.003] |
222.1 MB | — |
| 2016-01-20 |  |
SBF-SEM of late schizont-stage malaria parasite infected red blood cell [90 micrographs in MRC format] | Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K [Pubmed: 26772147] [DOI: 10.1016/j.jsb.2016.01.003] |
219.7 MB | — |
| 2016-01-14 |  |
Cryo electron tomography of mouse 5-HT3 receptors in lipid vesicles [46 class averages in MRC format] | Kudryashev M, Castano-Diez D, Deluz C, Hassaine G, Grasso L, Graf-Meyer A, Vogel H, Stahlberg H [Pubmed: 26724993] [DOI: 10.1016/j.str.2015.11.004] |
158.8 GB | 12.0 Å |
| 2015-11-24 |  |
Cryo-EM Structures of Synaptic RAG1-RAG2 Complex [multiple data sets in MRC format] | Heng R, Chambers MG, Fu T, Tong AB, Liao M, Wu H [Pubmed: 26548953] [DOI: 10.1016/j.cell.2015.10.055] |
65.9 GB | 3.4 Å |
