Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-09-05 |  |
Benchmark SBF SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in DM4 and TIFF formats] | Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
39.2 GB | — |
| 2023-08-25 |  |
MCRV virus [4271 multi-frame micrographs composed of 16 frames each in MRCS format] | Zhang Q, Jiang W [Pubmed: 37083840] [DOI: 10.1371/journal.ppat.1011341] |
4.2 TB | 3.1 - 3.7 Å |
| 2023-08-25 |  |
Single-particle cryo-EM dataset of an asymmetric nucleosome (10-N-0) [multiple data sets in TIFF and MRCS formats] | Gaullier G [Pubmed: 34486521] [DOI: 10.7554/eLife.71420] |
1.2 TB | 4.1 Å |
| 2023-08-24 |  |
In situ cryo-ET dataset of S. cerevisiae prepared using cryo-plasmaFIB milling [260 tilt series in MRC format] | Khavnekar S, Kelley R, Kotecha A [DOI: 10.1101/2023.08.18.553799] |
3.0 TB | 4.3 - 4.7 Å |
| 2023-08-23 |  |
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans (ADH) [5100 multi-frame micrographs composed of 40 frames each in TIFF format] | Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O [DOI: 10.1021/acscatal.3c01962] |
1.0 TB | 2.7 Å |
| 2023-08-20 |  |
Raw images of human CEPT1 complexed with CDP-choline [1533 multi-frame micrographs composed of 32 frames each in TIFF format] | Qian HW | 723.0 GB | 3.9 Å |
| 2023-08-20 |  |
AP2 bound to the APA domain of SGIP in the presence of heparin [12276 multi-frame micrographs composed of 60 frames each in TIFF format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
4.7 TB | 3.9 Å |
| 2023-08-20 |  |
AP2 bound to Y-cargo motif of Tgn38 in the presence of heparin [5958 micrographs in MRC format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
523.1 GB | 4.7 Å |
| 2023-08-20 |  |
The J-K RNA fragment of encephalomyocarditis virus IRES in complex with eIF4G-HEAT1 and eIF4A [6194 multi-frame micrographs composed of 40 frames each in TIFF format] | Suzuki H, Fujiyoshi Y | 1018.5 GB | 3.76 Å |
| 2023-08-20 |  |
The conformational cycle of prestin underlies outer-hair cell electromotility [6796 multi-frame micrographs composed of 40 frames each in TIFF format] | Perozo E [Pubmed: 34695838] [DOI: 10.1038/s41586-021-04152-4] |
3.1 TB | 3.3 Å |
| 2023-08-18 |  |
Mouse heavy chain apoferritin in plunge-frozen vitreous ice [10145 multi-frame micrographs composed of 553 frames each in EER format] | Bongiovanni G, Harder OF, Drabbels M, Lorenz UJ [Pubmed: 36438663] [DOI: 10.3389/fmolb.2022.1044509] |
1.9 TB | 1.47 Å |
| 2023-08-18 |  |
Mouse heavy chain apoferritin in vitreous ice after laser-melting and revitrification [12047 multi-frame micrographs composed of 553 frames each in EER format] | Bongiovanni G, Harder OF, Drabbels M, Lorenz UJ [Pubmed: 36438663] [DOI: 10.3389/fmolb.2022.1044509] |
2.2 TB | 1.63 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with AAA mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [8435 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
3.2 TB | 2.33 - 2.88 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with AAm6A mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [7207 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
2.7 TB | 2.11 - 2.62 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with Am6AA mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [7172 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
2.7 TB | 2.21 - 2.81 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with m6AAA mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [9366 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
3.3 TB | 2.37 - 2.85 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with AAA mRNA codon in the A-site [10115 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
3.8 TB | 2.04 Å |
| 2023-08-18 |  |
Initiation complex consisting of E. coli 70S ribosome with AAm6A mRNA codon in the A-site [10276 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
4.0 TB | 2.04 Å |
| 2023-08-18 |  |
Cryo-EM study on a single, highly heterogeneous cellular fraction with megadalton complexes derived from Chaetomium thermophilum [522 multi-frame micrographs composed of 30 frames each in MRC format] | Semchonok DA, Kyrilis FL, Hamdi F, Kastritis PL [DOI: 10.2139/ssrn.4211492] |
489.4 GB | 3.46 - 3.74 Å |
| 2023-08-18 |  |
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP (200 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
580.8 GB | 3.2 Å |
| 2023-08-18 |  |
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP (200 kV) [3527 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
664.6 GB | 3.6 Å |
| 2023-08-18 |  |
Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation (200 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
1.9 TB | 3.8 Å |
| 2023-08-18 |  |
Cryo-EM structure of the wild-type solitary ECF module in DDM micelles in the ATPase open and nucleotide-free conformation (200 kV) [1862 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
360.8 GB | 4.3 Å |
| 2023-08-18 |  |
Mouse heavy chain apoferritin in vitreous ice after plunge-freezing [4745 multi-frame micrographs composed of 784 frames each in EER format] | Bongiovanni G, Harder OF, Voss JM, Drabbels M, Lorenz UJ [Pubmed: 37219589] [DOI: 10.1107/S2059798323003431] |
1023.1 GB | 1.61 Å |
| 2023-08-18 |  |
Negative stain EM structure of the NF155 extracellular domain [95 micrographs in MRC format] | McKie SJ, Deane JE [Pubmed: 36996106] [DOI: 10.1073/pnas.2218823120] |
1.5 GB | 19.0 Å |
