EMPIAR-13722 - Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution [6144 multi-frame micrographs composed of 40 frames each in TIFF format]

EMPIAR-13722

Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution [6144 multi-frame micrographs composed of 40 frames each in TIFF format]

Publication:

Distinctive and functional pigment arrangements in Lhcp, a prasinophyte-specific photosynthetic light-harvesting complex

Seki S, Kubota M, Yamano N, Kim E, Ishii A, Miyata T, Tanaka H, Cogdell RJ, Zhang JP, Namba K, Kurisu G, Minagawa J, Fujii R

Communications biology 8 (2025)

PMID: 41249568

DOI: 10.1038/s42003-025-08977-x

Related EMDB entry:

EMD-64036

Deposited:

2025-11-28

Released:

2026-10-09

Last modified:

2026-10-09

Imageset size:

3.46 TB

Imageset DOI:

10.6019/EMPIAR-13722

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Lhcp trimer

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6144

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.859, 0.859)

Details:

- Magnification : 60 K
- spherical aberration : 2.7mm
- Accelerating Voltage : 300 kV
- Dose per frame: 2 electron/A^2/frame
- raw pixel size : 0.859 Å
- Total Dose 80 electron

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Citations

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QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning.

Sun Y, Zhao J, Xu N, Wang L, Ding W, Li M. (2026)

CryoMV: Structure-Prior-Guided Modeling and Real-Particle Validation of Continuous Conformational Transitions in Cryo-EM

Li F, Dong H, Tang S, Wang X, Zhang C, Ji C, Han R, Zhang F, Wan X. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

Easymode: general pretrained networks for cellular cryo-ET enable flexible approaches to subtomogram averaging

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AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

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