EMPIAR-13413 - tolvaptan-bound V2R-BRIL with and without Fab [multiple data sets in TIFF format]

EMPIAR-13413

tolvaptan-bound V2R-BRIL with and without Fab [multiple data sets in TIFF format]

Publication:

A Rapid and Universal Pipeline for High-Resolution GPCR Structure Determination through In Silico Construct Optimization and de novo Protein Design

Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Narita TJ, Kugawa M, Fukuda M, Kato HE, Kojima A

bioRxiv (2026)

DOI: 10.64898/2026.04.02.716066

Related EMDB entry:

EMD-64539 EMD-64538

Deposited:

2026-02-19

Released:

2026-10-06

Last modified:

2026-10-06

Imageset size:

5.51 TB

Imageset DOI:

10.6019/EMPIAR-13413

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. tolvaptan-bound V2R-BRIL with Fab :: imageset_1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

7002

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 50.0 e/A^2

Files:

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2. tolvaptan-bound V2R-BRIL with Fab :: imageset_2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

8046

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 50.0 e/A^2

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. tolvaptan-bound V2R-BRIL without Fab

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

11178

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 47.1 e/A^2

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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