EMPIAR-13104 - GDH in complex with compound G1, processed with cryoPARES [stack of 277213 particles in MRCS format]

EMPIAR-13104

GDH in complex with compound G1, processed with cryoPARES [stack of 277213 particles in MRCS format]

Publication:

Supervised Deep Learning for Efficient Cryo-EM Image Alignment in Drug Discovery with cryoPARES

Sanchez-Garcia R, Berndt A, Apelbaum A, Reeks J, Williams PA, Poelking C, Deane CM, Saur M

bioRxiv (2025)

DOI: 10.1101/2025.03.04.641536

Related EMDB entry:

EMD-55535

Deposited:

2025-11-05

Released:

2026-10-02

Last modified:

2026-10-02

Imageset size:

88.04 GB

Imageset DOI:

10.6019/EMPIAR-13104

Experimental metadata:

Download xml json

Contains:

picked particles - single frame - processed

Image Sets

1. Aligned particle stacks (.star and .mrcs) of GDH in complex with compound G1, processed with cryoPARES

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

277213

Image size:

(356, 356)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.9991326, 0.9991326)

Details:

Particles of GDH in complex with compound G1,
Picked particles are at data/gdh_G1_float16/gdh_G1_float16/particles.star. Aligned particles are at data/gdh_G1_float16/gdh_G1_float16/aligned_particles.star. Alignment was performed using cryoPARES.

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Citations

Post-acquisition super resolution for cryo-electron microscopy.

Burton Smith RN, Murata K. (2026)

Structural heterogeneity of CTE Type I tau filaments with an interface-shifted polymorph

Watanabe R, Lee EB. (2026)

Ligand-induced activation of RyR1 in native membranes.

Mikirtumov V, Golusik S, Huo R, Sprink T, Balyschew N, Yang W, Diebolder C, Yuan S, Kotecha A, Kudryashev M. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoMV: Structure-Prior-Guided Modeling and Real-Particle Validation of Continuous Conformational Transitions in Cryo-EM

Li F, Dong H, Tang S, Wang X, Zhang C, Ji C, Han R, Zhang F, Wan X. (2026)

QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning.

Sun Y, Zhao J, Xu N, Wang L, Ding W, Li M. (2026)

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)