EMPIAR-12955 - Cellular hallmarks from volume electron microscopy reveal development progression of Plasmodium ookinetes [1 reconstructed volumes in MRC format]

EMPIAR-12955

Cellular hallmarks from volume electron microscopy reveal development progression of Plasmodium ookinetes [1 reconstructed volumes in MRC format]

Publication:

Cellular hallmarks from volume electron microscopy reveal development progression of Plasmodium ookinetes

Darif N

Advanced Science (---)

Related EMDB entry:

Deposited:

2025-09-03

Released:

2026-09-09

Last modified:

2026-09-09

Imageset size:

7.43 GB

Imageset DOI:

10.6019/EMPIAR-12955

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. ssET tomogram and segmentation dataset of a Plasmodium berghei ookinete

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1477, 3789)

Pixel type:

SIGNED BYTE

Pixel spacing:

(22.36, 22.36)

Details:

This dataset contains a stitched ssET tomogram of a mature Plasmodium berghei
ookinete and a corresponding segmentation with annotated organelles and subcellular
structures.

Files:

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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