EMPIAR-12153 - In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry [2810 multi-frame micrographs composed of 2765 frames each in EER format]

EMPIAR-12153

In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry [2810 multi-frame micrographs composed of 2765 frames each in EER format]

Publication:

A stargate mechanism ofMicroviridaegenome delivery unveiled by cryogenic electron tomography

Bardy P, MacDonald CI, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NT, Traore DA, König HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PC, Antson AA

bioRxiv (2024)

DOI: 10.1101/2024.06.11.598214

Related EMDB entry:

EMD-50358

Deposited:

2024-06-26

Released:

2024-07-16

Last modified:

2024-07-16

Imageset size:

4.78 TB

Imageset DOI:

10.6019/EMPIAR-12153

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw eer images of in vitro-induced genome-releasing Ebor particle

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

2810

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(1.2, 1.2)

Details:

total dose 50 e/A^2
collected on Falcon 4, Cs=2.7mm, Voltage=200kV
mtf of detector and gain reference are in the gain_ref_mtf folder

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

'authorString'

See all citations

Protein Data Bank Japan News

[2025-09-26]

[wwPDB] Introducing the first 3DEM Model-Map percentile slider to the wwPDB validation report

[2025-09-24]

278 new PDB entries have been released on 2025-09-24.

[2025-07-17]

[wwPDB] Transitioning to PDBx/mmCIF and Extended PDB IDs

[2025-06-25]

[wwPDB] Extension to EMDB Accession Codes

[2025-04-18]

[wwPDB] Download Snapshots of the PDB Core Archive via HTTPS, SYNC, RSYNC, or FTP

[2025-03-25]

Announcement of the PDBj Newsletter Vol.25 release

[2025-03-11]

[wwPDB] Poster Prize Awarded at The Biophysical Society Meeting

[2025-03-10]

[wwPDB] New version of PDB-IHM validation reports now include assessments of crosslinking mass spectrometry-based structure models

[2025-01-30]

[wwPDB] Take the PDBx/mmCIF User Guide Survey and Win!

[2025-01-17]

[wwPDB] PDB-Dev now PDB-IHM

See all news