EMPIAR-11577 - Cryo-electron tomograms of Host - S. Typhi interaction [multiple data sets in MRC format]

EMPIAR-11577

Cryo-electron tomograms of Host - S. Typhi interaction [multiple data sets in MRC format]

Publication:

The Parkinson's disease kinase LRRK2 coordinates a cell intrinsic defense pathway against the intracellular pathogen Salmonella

Lian H, Park D, Chen M, Schueder F, Lara-Tejero M, Liu J, Galan J

(---)

Related EMDB entry:

EMD-41046

Deposited:

2023-06-07

Released:

2024-04-21

Last modified:

2024-04-21

Imageset size:

409.70 GB

Imageset DOI:

10.6019/EMPIAR-11577

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. Unaligned tiltseries collected with Glacios at 3.827A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(3.827, 3.827)

Details:

Tilt series collected with FEI Glacios (K2 camera) at 3.827A/pix. No energy filter. Target defocus = ~-6 micrometer.

Files:

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2. Unaligned tiltseries collected with Glacios at 3.384A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4092, 5760)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(3.384, 3.384)

Details:

Tilt series collected with FEI Krios (K3 camera) at 3.384 A/pix. Used energy filter and VPP. Target defocus = -0.5 micrometer

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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3. Unaligned tiltseries collected with Glacios at 4.556A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4092, 5760)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(4.556, 4.556)

Details:

Tilt series collected with FEI Krios (K3 camera) at 4.556 A/pix. Used energy filter and VPP. Target defocus = -0.5 micrometer

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

CryoPROS: Correcting misalignment caused by preferred orientation using AI-generated auxiliary particles.

Zhang H, Zheng D, Wu Q, Yan N, Peng H, Hu Q, Peng Y, Yan Z, Shi Z, Bao C, Hu M. (2025)

Few-shot learning for non-vitrified ice segmentation.

Vivas-Lago A, Castaño-Díez D. (2025)

Automated removal of corrupted tilts in cryo-electron tomography.

Majtner T, Turoňová B. (2025)

Reanalysis of cryo-EM data reveals ALK-cytokine assemblies with both 2:1 and 2:2 stoichiometries.

Felix J, De Munck S, Bazan JF, Savvides SN. (2025)

Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE.

Van CTS, Reboul CF, Caesar JJE, Meana-Pañeda R, Lountos GT, Deme JC, Bryant OJ, Johnson S, Piczak CT, Valkov E, Lea SM, Elmlund H. (2025)

See all citations

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