EMPIAR-12515 - Cryo-electron tomography of pyrenoid Rubisco of Chlamydomonas reinhardtii [multiple data sets in MRC format]

EMPIAR-12515

Cryo-electron tomography of pyrenoid Rubisco of Chlamydomonas reinhardtii [multiple data sets in MRC format]

Publication:

In-cell structure and variability of pyrenoid Rubisco

Elad N, Hou Z, Dumoux M, Ramezani A, Perilla JR, Zhang P

Nature communications 16 (2025)

PMID: 40835820

DOI: 10.1038/s41467-025-62998-y

Related EMDB entry:

EMD-52438

Deposited:

2025-01-07

Released:

2025-09-22

Last modified:

2025-09-22

Imageset size:

103.50 GB

Imageset DOI:

10.6019/EMPIAR-12515

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. unaligned raw tilt series with tilt and xf files

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(1.94, 1.94)

Details:

---

Files:

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2. unaligned raw tilt series with rawtilt files

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(1.978, 1.978)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

The vault associates with membranes in situ.

Geißler K, Kreysing JP, Wang Y, Glushkova D, Obarska-Kosinska A, Hoffmann PC, Böhm S, Schmidt A, Meier-Credo J, Langer JD, Hummer G, Beck M. (2026)