EMPIAR-12387 - Vibrio cholerae DdmD apo complex [multiple data sets in TIFF and MRC formats]

EMPIAR-12387

Vibrio cholerae DdmD apo complex [multiple data sets in TIFF and MRC formats]

Publication:

Molecular mechanism of plasmid elimination by the DdmDE defense system

Loeff L, Adams DW, Chanez C, Stutzmann S, Righi L, Blokesch M, Jinek M

Science (New York, N.Y.) 385 (2024) 188-194

PMID: 38870273

DOI: 10.1126/science.adq0534

Related EMDB entry:

EMD-50090

Deposited:

2024-10-29

Released:

2025-02-10

Last modified:

2025-02-10

Imageset size:

1.61 TB

Imageset DOI:

10.6019/EMPIAR-12387

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame

Image Sets

1. Unaligned multi-frame micrographs of Vibrio cholerae DdmD apo complex

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

9026

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.65, 0.65)

Details:

The micrographs are 42 raw movie frames (accumulating 59.979 electrons per squared Angstrom in a 1.26 second exposure).

Files:

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2. Gain reference

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.65, 0.65)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

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We recommend using rsync, aspera, globus, etc.

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

EMICSS: added-value annotations for EMDB entries.

Duraisamy AK, Fonseca N, Kleywegt GJ, Patwardhan A, Morris KL. (2025)

Global conformations of <i>Pichia pastoris</i> complex I are distinguished by the binding of a unique interdomain bridging subunit.

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

Disulfide-constrained Fabs overcome target size limitation for high-resolution single particle cryoEM.

Kung JE, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J. (2025)

See all citations

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