EMPIAR-12236 - Low-dose cryo-electron ptychography of Apoferritin at 4.0 mrad [90 diffraction images in BIG DATA VIEWER HDF5 format]

EMPIAR-12236

Low-dose cryo-electron ptychography of Apoferritin at 4.0 mrad [90 diffraction images in BIG DATA VIEWER HDF5 format]

Publication:

Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution

Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H

bioRxiv (2024)

DOI: 10.1101/2024.02.12.579607

Related EMDB entry:

EMD-19425 EMD-19885 EMD-19432 EMD-19430

Deposited:

2024-05-23

Released:

2024-08-29

Last modified:

2024-08-29

Imageset size:

89.97 GB

Imageset DOI:

10.6019/EMPIAR-12236

Experimental metadata:

Download xml json

Contains:

diffraction images

Image Sets

1. Diffraction patterns of Apoferritin particles

Category:

diffraction images

Image format:

BIG DATA VIEWER HDF5

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

These are the 4D-STEM diffraction patterns of Apoferritin particles. All of the information, such as acceleration voltage and scan pixel size, are available as metadata in the h5 file.

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Citations

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Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

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CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

EMICSS: added-value annotations for EMDB entries.

Duraisamy AK, Fonseca N, Kleywegt GJ, Patwardhan A, Morris KL. (2025)

Global conformations of <i>Pichia pastoris</i> complex I are distinguished by the binding of a unique interdomain bridging subunit.

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

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