EMPIAR-12073 - The cryo-electron microscopy structure of a Vitiosangium bacterial gasdermin in an slinky-like oligomeric conformation [8156 multi-frame micrographs composed of 50 frames each in TIFF format]

EMPIAR-12073

The cryo-electron microscopy structure of a Vitiosangium bacterial gasdermin in an slinky-like oligomeric conformation [8156 multi-frame micrographs composed of 50 frames each in TIFF format]

Publication:

Structure and assembly of a bacterial gasdermin pore

Johnson AG, Mayer ML, Schaefer SL, McNamara-Bordewick NK, Hummer G, Kranzusch PJ

Nature 628 (2024) 657-663

PMID: 38509367

DOI: 10.1038/s41586-024-07216-3

Related EMDB entry:

EMD-40570

Deposited:

2024-05-03

Released:

2024-05-16

Last modified:

2024-05-16

Imageset size:

2.07 TB

Imageset DOI:

10.6019/EMPIAR-12073

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw micrographs of Vitiosangium bacterial gasdermin slinky-like oligomers

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

8156

Image size:

(4092, 5760)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.06, 1.06)

Details:

---

Files:

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Citations

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

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Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

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The vault associates with membranes in situ.

Geißler K, Kreysing JP, Wang Y, Glushkova D, Obarska-Kosinska A, Hoffmann PC, Böhm S, Schmidt A, Meier-Credo J, Langer JD, Hummer G, Beck M. (2026)