EMPIAR-11392 - 3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format]

EMPIAR-11392

3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format]

Publication:

3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning

Dyhr MCA, Sadeghi M, Moynova R, Knappe C, Kepsutlu Çakmak B, Werner S, Schneider G, McNally J, Noe F, Ewers H

bioRxiv (2022)

DOI: 10.1101/2022.05.16.492055

Related EMDB entry:

Deposited:

2023-01-26

Released:

2023-01-30

Last modified:

2023-01-30

Imageset size:

25.19 GB

Imageset DOI:

10.6019/EMPIAR-11392

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Tomographic reconstruction of plunge-frozen CRFK cell

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1284, 1324)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(9.8, 9.8)

Details:

Representative datasets from the manuscript "3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning", https://doi.org/10.1101/2022.05.16.492055
Included are tomographic reconstructions of plunge-frozen CRFK cells, as well as corresponding raw tilt series and log files.

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Citations

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CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

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Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

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